Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| HNSC | rs7661057 | chr4:4946676 | A/C | 1.08E-9 | 412 | 2.73 | 14.47 | 16.43 | KM Plot |
| HNSC | rs7664699 | chr4:110760941 | A/G | 5.8E-5 | 402 | 13.13 | 16.37 | 16.5 | KM Plot |
| HNSC | rs77050280 | chr6:74339222 | G/C | 6.45E-5 | 407 | 17.13 | 12.57 | 13.43 | KM Plot |
| HNSC | rs77238205 | chr22:42682262 | C/G | 2.07E-5 | 409 | 16.68 | 14.42 | 9.13 | KM Plot |
| HNSC | rs77283497 | chr22:31037205 | C/T | 3.25E-5 | 408 | 16.35 | 16.78 | 6.75 | KM Plot |
| HNSC | rs7745070 | chr6:150242583 | C/A | 2.49E-5 | 405 | 16.78 | 17.87 | 12.6 | KM Plot |
| HNSC | rs7745560 | chr6:86288921 | A/T | 1.32E-5 | 412 | 3.67 | 15.03 | 16.5 | KM Plot |
| HNSC | rs7747069 | chr6:74342807 | T/C | 3.14E-5 | 412 | 17.13 | 13.1 | 12.73 | KM Plot |
| HNSC | rs7764560 | chr6:74342632 | A/T | 1.21E-5 | 412 | 17.13 | 13.12 | 12.03 | KM Plot |
| HNSC | rs7764983 | chr6:74342686 | G/T | 3.14E-5 | 412 | 17.13 | 13.1 | 12.73 | KM Plot |
| HNSC | rs7805860 | chr7:76225513 | A/G | 1.11E-10 | 410 | 16.37 | 14.77 | 3.95 | KM Plot |
| HNSC | rs78875537 | chr3:42095286 | C/T | 0 | 403 | 16.17 | 17.02 | 0.07 | KM Plot |
| HNSC | rs7924969 | chr11:34982141 | G/A | 1.41E-5 | 412 | 16.33 | 16.3 | 9.2 | KM Plot |
| HNSC | rs7925426 | chr11:114588359 | C/T | 3.8E-5 | 412 | 7.17 | 14.17 | 17.13 | KM Plot |
| HNSC | rs7929287 | chr11:34983662 | A/G | 1.41E-5 | 412 | 16.33 | 16.3 | 9.2 | KM Plot |